Usage Guide

This section provides a step-by-step guide on how to use the AMOFMS tool for CG automated mapping and parameters optimization.

The typical workflow for using AMOFMS involves the following steps:

• 1. Determine Coarse-Grained Force Field
• 2. Mapping
• 3. Identify Parameters for Optimization
• 4. Define Objective Function
• 5. Select Optimizer
• 6. Run Optimization and Save Log